No. words: 1711; after pruning: 1685


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:819)  792  0.00 0.12 0.24  UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1        1   821 (29)  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   (41)   820     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   861 
   70    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1    28 
  170  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   692 
  174    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   132 
  186  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   676 
  210    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   168 
  226  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   636 
  270    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   228 
  274  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   588 
  314    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   272 
  322  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   540 
  470    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   428 
  478  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   384 
  542    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   500 
  554  C UCW056_C06_BE497820Ta19P033D01P002F031F1_044.ab1   308 
  838    UCW055_C06_BE497820Ta19P033D01P002F031R1_044.ab1   796 
Contig length: old 891, new 892

Contig length: old 892, new 892
New start: 0