No. words: 1695; after pruning: 1655


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.9 (1,1:818)  796  0.12 0.12 0.12  UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1        1   819 (35)  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   (22)   819     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  404 nodes

 204 str. conn. components

Path
    1  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   841 
   37    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1    14 
  249  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   593 
  253    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   230 
  269  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   573 
  277    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   254 
  281  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   561 
  529    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   506 
  533  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   309 
  577    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   554 
  593  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1   249 
  825    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   802 
  834  C UCW056_B11_BE497820Ta20P033E01P002F031F1_093.ab1     9 
  838    UCW055_B11_BE497820Ta20P033E01P002F031R1_093.ab1   815 
Contig length: old 876, new 877

Contig length: old 877, new 877
New start: 0