No. words: 1727; after pruning: 1701


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.7 (1,1:819)  793  0.37 0.00 0.12  UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1        1   820 (44)  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   (44)   819     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   863 
   48    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1     4 
  204  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   660 
  208    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   164 
  212  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   652 
  216    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   172 
  252  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   612 
  264    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   220 
  268  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   596 
  296    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   252 
  316  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   548 
  520    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   476 
  528  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   336 
  536    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   492 
  540  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   324 
  548    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   504 
  556  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   308 
  592    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   548 
  604  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   260 
  608    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   564 
  616  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   248 
  652    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   608 
  664  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   200 
  732    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   688 
  736  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1   128 
  772    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   728 
  783  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1    81 
  811    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   767 
  826  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1    38 
  846    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   802 
  855  C UCW056_C11_BE497820Ta21P033E01P002F031F1_091.ab1    10 
  859    UCW055_C11_BE497820Ta21P033E01P002F031R1_091.ab1   815 
Contig length: old 907, new 908

Contig length: old 908, new 908
New start: 0