No. words: 1253; after pruning: 1213


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.8 (1,1:822)  384  0.26 0.00 0.00  UCW055_E11_BE497820Ta23P033E01P002F031R1_087.ab1      432   823 (34)  C UCW056_E11_BE497820Ta23P033E01P002F031F1_087.ab1   (4)   392     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1    UCW055_E11_BE497820Ta23P033E01P002F031R1_087.ab1     1 
  599  C UCW056_E11_BE497820Ta23P033E01P002F031F1_087.ab1   225 
  615    UCW055_E11_BE497820Ta23P033E01P002F031R1_087.ab1   615 
  619  C UCW056_E11_BE497820Ta23P033E01P002F031F1_087.ab1   205 
  778    UCW055_E11_BE497820Ta23P033E01P002F031R1_087.ab1   778 
  782  C UCW056_E11_BE497820Ta23P033E01P002F031F1_087.ab1    42 
  818    UCW055_E11_BE497820Ta23P033E01P002F031R1_087.ab1   818 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0