No. words: 1710; after pruning: 1684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 17.0 (1,1:818)  796  0.00 0.00 0.12  UCW055_B04_BE497820Td02P033D01P002F031R1_030.ab1        1   817 (34)  C UCW056_B04_BE497820Td02P033D01P002F031F1_030.ab1   (41)   818     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C UCW056_B04_BE497820Td02P033D01P002F031F1_030.ab1   859 
   61    UCW055_B04_BE497820Td02P033D01P002F031R1_030.ab1    20 
  185  C UCW056_B04_BE497820Td02P033D01P002F031F1_030.ab1   675 
  193    UCW055_B04_BE497820Td02P033D01P002F031R1_030.ab1   152 
  257  C UCW056_B04_BE497820Td02P033D01P002F031F1_030.ab1   603 
  841    UCW055_B04_BE497820Td02P033D01P002F031R1_030.ab1   800 
  850  C UCW056_B04_BE497820Td02P033D01P002F031F1_030.ab1    11 
  854    UCW055_B04_BE497820Td02P033D01P002F031R1_030.ab1   813 
Contig length: old 891, new 892

Contig length: old 892, new 892
New start: 0