No. words: 1701; after pruning: 1675


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 17.4 (1,1:819)  797  0.00 0.00 0.12  UCW055_C04_BE497820Td03P033D01P002F031R1_028.ab1        1   817 (34)  C UCW056_C04_BE497820Td03P033D01P002F031F1_028.ab1   (31)   819     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C UCW056_C04_BE497820Td03P033D01P002F031F1_028.ab1   850 
   51    UCW055_C04_BE497820Td03P033D01P002F031R1_028.ab1    20 
  195  C UCW056_C04_BE497820Td03P033D01P002F031F1_028.ab1   656 
  199    UCW055_C04_BE497820Td03P033D01P002F031R1_028.ab1   168 
  247  C UCW056_C04_BE497820Td03P033D01P002F031F1_028.ab1   604 
  831    UCW055_C04_BE497820Td03P033D01P002F031R1_028.ab1   800 
  839  C UCW056_C04_BE497820Td03P033D01P002F031F1_028.ab1    13 
  843    UCW055_C04_BE497820Td03P033D01P002F031R1_028.ab1   812 
Contig length: old 881, new 882

Contig length: old 882, new 882
New start: 0