No. words: 1706; after pruning: 1680


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:820)  797  0.00 0.00 0.24  UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1        1   822 (32)  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1   (32)   820     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1   852 
   52    UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1    20 
  168  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1   685 
  184    UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1   152 
  192  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1   661 
  204    UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1   172 
  212  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1   641 
  832    UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1   800 
  840  C UCW056_D04_BE497820Td04P033D01P002F031F1_026.ab1    14 
  844    UCW055_D04_BE497820Td04P033D01P002F031R1_026.ab1   812 
Contig length: old 885, new 886

Contig length: old 886, new 886
New start: 0