No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.3 (1,1:816)  284  1.63 0.00 0.00  UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1      512   817 (39)  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1   (0)   306     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1     1 
  644  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1   174 
  648    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   648 
  656  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1   162 
  660    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   660 
  672  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1   146 
  684    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   684 
  708  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1   110 
  728    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   728 
  732  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1    86 
  740    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   740 
  744  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1    74 
  800    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   800 
  804  C UCW056_E04_BE497820Td05P033D01P002F031F1_024.ab1    14 
  812    UCW055_E04_BE497820Td05P033D01P002F031R1_024.ab1   812 
Contig length: old 856, new 856

Contig length: old 856, new 856
New start: 0