No. words: 1412; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 9.1 (1,1:816)  528  0.00 0.00 0.18  UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1      269   816 (41)  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   (6)   549     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1     1 
  461  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   357 
  473    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   473 
  517  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   301 
  521    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   521 
  601  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   217 
  609    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   609 
  621  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   197 
  625    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   625 
  637  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   181 
  641    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   641 
  649  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   169 
  661    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   661 
  669  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   149 
  689    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   689 
  693  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1   125 
  729    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   729 
  733  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1    85 
  793    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   793 
  807  C UCW056_H04_BE497820Td08P033D01P002F031F1_018.ab1    12 
  811    UCW055_H04_BE497820Td08P033D01P002F031R1_018.ab1   811 
Contig length: old 857, new 857

Contig length: old 857, new 857
New start: 0