No. words: 1715; after pruning: 1689


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.4 (1,1:817)  796  0.00 0.00 0.12  UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1        1   817 (39)  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   (42)   817     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  408 nodes

 206 str. conn. components

Path
    1  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   859 
   62    UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1    20 
  202  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   658 
  210    UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1   168 
  238  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   622 
  270    UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1   228 
  278  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   582 
  290    UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1   248 
  298  C UCW056_B05_BE497820Td10P033D01P002F031F1_045.ab1   562 
  842    UCW055_B05_BE497820Td10P033D01P002F031R1_045.ab1   800 
Contig length: old 897, new 898

Contig length: old 898, new 898
New start: 0