No. words: 1627; after pruning: 1587


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 14.6 (1,1:891)  700  0.41 0.00 0.14  UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1        9   740 (0)  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   (3)   884   154 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1     1 
  321  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   573 
  325    UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1   325 
  369  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   525 
  373    UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1   373 
  433  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   461 
  465    UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1   465 
  473  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   421 
  493    UCW006F_C06_BE497820Tu01P002F03F091F1_038.ab1   493 
  501  C UCW006R_C06_BE497820Tu01P002F03F091R1_038.ab1   393 
Contig length: old 892, new 893

Contig length: old 893, new 893
New start: 0