No. words: 3366; after pruning: 3286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.7 (1,1:-6)  843  0.23 0.00 0.00  UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1        1   861 (0)    UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1        7   867 (0) *
Merge:(0)    0    0.0 17.2 (1,1:-14)  763  0.26 0.00 0.00  UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1        1   777 (70)    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1       15   791 (0) *
Merge:(0)    8    0.0 15.4 (2,2:808)  780  0.49 0.12 0.12  UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1        1   809 (38)  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   (52)   809     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 8       1        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  2356 nodes

 600 str. conn. components

Path
    1  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   861 
   47  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   821 
   50    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1    12 
   68  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   794 
   74    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1    35 
  101    UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1    48 
  161    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   122 
  165    UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1   112 
  534  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   328 
  539    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   500 
  553    UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1   500 
  578  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   290 
  579    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   540 
  581    UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1   528 
  582  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   280 
  590    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   551 
  610  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   252 
  611  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   257 
  615    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   576 
  619  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   243 
  631    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   592 
  635  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   227 
  654  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   214 
  715  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   147 
  719    UCW030F_G10_BE498768As02P014A06P014A121F1_068.ab1   680 
  720  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   142 
  736  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   132 
  747  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1   115 
  760  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1   108 
  792  C UCW018R_E12_BE498768As02P014A06P014A121R1_088.ab1    70 
  804  C UCW030R_G10_BE498768As02P014A06P014A121R1_068.ab1    64 
  854    UCW018F_E12_BE498768As02P014A06P014A121F1_088.ab1   802 
Contig length: old 899, new 899

Contig length: old 899, new 899
New start: 0