No. words: 3283; after pruning: 3217


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.8 (1,1:797)  745  0.13 0.00 0.00  UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1        1   759 (0)  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   (53)   798    40 *
Merge:(0)    8    0.0 13.9 (1,1:772)  735  0.78 0.00 0.00  UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1        9   773 (91)  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   (44)   765     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 8       1        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  376 nodes

 190 str. conn. components

Path
    1  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   809 
   56    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1    20 
   72  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   738 
   88    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1    52 
   96  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   714 
  100    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1    64 
  120  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   690 
  124    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1    88 
  136  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   674 
  140    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   104 
  328  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   482 
  472    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   436 
  520  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1   290 
  712    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   676 
  736  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1    74 
  748    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   712 
  752  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1    58 
  764    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   728 
  792  C UCW030R_G12_BE498768At02P014A06P014A121R1_084.ab1    18 
  804    UCW030F_G12_BE498768At02P014A06P014A121F1_084.ab1   768 
Contig length: old 900, new 900

Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   851 
   57    UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1     4 
  465  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   387 
  473    UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1   420 
  533  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   319 
  545    UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1   492 
  553  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   299 
  557    UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1   504 
  573  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   279 
  589    UCW018F_G12_BE498768At02P014A06P014A121F1_084.ab1   536 
  593  C UCW018R_G12_BE498768At02P014A06P014A121R1_084.ab1   259 
Contig length: old 851, new 851

Contig length: old 900, new 900
New start: 0 

Contig length: old 851, new 851
New start: 0