No. words: 1278; after pruning: 1252


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.1 (1,1:613)  583  0.00 0.33 0.16  UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1        1   610 (24)  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1   (29)   615     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1   644 
   67    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1    36 
   95  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1   550 
  103    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1    72 
  131  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1   514 
  183    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1   152 
  191  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1   454 
  531    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1   500 
  559  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1    86 
  583    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1   552 
  591  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1    54 
  595    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1   564 
  603  C UCW007R_A01_BE498768Ld01P002B01B071R1_015.ab1    42 
  623    UCW007F_A01_BE498768Ld01P002B01B071F1_015.ab1   592 
Contig length: old 664, new 665

Contig length: old 665, new 665
New start: 0