No. words: 1257; after pruning: 1231


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:592)  572  0.00 0.00 0.17  UCW007F_D01_BE498768Ld04P002B01B071F1_009.ab1        1   593 (20)  C UCW007R_D01_BE498768Ld04P002B01B071R1_009.ab1   (52)   592     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW007R_D01_BE498768Ld04P002B01B071R1_009.ab1   644 
   80    UCW007F_D01_BE498768Ld04P002B01B071F1_009.ab1    28 
   96  C UCW007R_D01_BE498768Ld04P002B01B071R1_009.ab1   549 
  528    UCW007F_D01_BE498768Ld04P002B01B071F1_009.ab1   476 
  608  C UCW007R_D01_BE498768Ld04P002B01B071R1_009.ab1    37 
  612    UCW007F_D01_BE498768Ld04P002B01B071F1_009.ab1   560 
Contig length: old 664, new 665

Contig length: old 665, new 665
New start: 0