No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 11.7 (1,1:590)  567  0.00 0.00 0.17  UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1        1   587 (40)  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   (52)   590     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   642 
   56    UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1     4 
   60  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   583 
   68    UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1    16 
  100  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   543 
  112    UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1    60 
  132  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   511 
  488    UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1   436 
  492  C UCW007R_E01_BE498768Ld05P002B01B071R1_007.ab1   151 
  624    UCW007F_E01_BE498768Ld05P002B01B071F1_007.ab1   572 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0