No. words: 1288; after pruning: 1262


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:602)  581  0.00 0.33 0.00  UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1        1   602 (51)  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1   (31)   604     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1   635 
   69    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1    36 
   77  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1   559 
   81    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1    48 
  101  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1   535 
  105    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1    72 
  125  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1   511 
  489    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1   456 
  593  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1    43 
  601    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1   568 
  605  C UCW007R_G01_BE498768Ld07P002B01B071R1_003.ab1    31 
  629    UCW007F_G01_BE498768Ld07P002B01B071F1_003.ab1   596 
Contig length: old 685, new 686

Contig length: old 686, new 686
New start: 0