No. words: 1631; after pruning: 1563


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.7 (1,1:825)  746  0.39 0.39 0.00  UCW018F_A12_BE498768Ld08P014A06P014A121F1_096.ab1        1   773 (0)  C UCW018R_A12_BE498768Ld08P014A06P014A121R1_096.ab1   (30)   828    53 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  368 nodes

 186 str. conn. components

Path
    1  C UCW018R_A12_BE498768Ld08P014A06P014A121R1_096.ab1   858 
   48    UCW018F_A12_BE498768Ld08P014A06P014A121F1_096.ab1    16 
  532  C UCW018R_A12_BE498768Ld08P014A06P014A121R1_096.ab1   327 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0