No. words: 1275; after pruning: 1249


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.0 (1,1:606)  584  0.00 0.00 0.17  UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1        1   603 (24)  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   (42)   606     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   648 
   62    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1    20 
   66  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   583 
   70    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1    28 
   78  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   571 
  114    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1    72 
  134  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   515 
  186    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1   144 
  442  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1   207 
  586    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1   544 
  614  C UCW007R_A02_BE498768Ld09P002B01B071R1_016.ab1    35 
  622    UCW007F_A02_BE498768Ld09P002B01B071F1_016.ab1   580 
Contig length: old 668, new 669

Contig length: old 669, new 669
New start: 0