No. words: 1264; after pruning: 1238


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 11.7 (1,1:591)  569  0.00 0.00 0.17  UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1        1   589 (24)  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1   (60)   591     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1   651 
   80    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1    20 
   84  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1   568 
   88    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1    28 
  104  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1   548 
  116    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1    56 
  140  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1   512 
  204    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1   144 
  564  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1    88 
  592    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1   532 
  616  C UCW007R_B02_BE498768Ld10P002B01B071R1_014.ab1    36 
  624    UCW007F_B02_BE498768Ld10P002B01B071F1_014.ab1   564 
Contig length: old 672, new 673

Contig length: old 673, new 673
New start: 0