No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.4 (1,1:574)  550  0.00 0.00 0.18  UCW061_B12_BE498768Sn27P033F04P002B071F1_094.ab1        3   571 (44)  C UCW062_B12_BE498768Sn27P033F04P002B071R1_094.ab1   (49)   572     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C UCW062_B12_BE498768Sn27P033F04P002B071R1_094.ab1   621 
   77    UCW061_B12_BE498768Sn27P033F04P002B071F1_094.ab1    30 
  157  C UCW062_B12_BE498768Sn27P033F04P002B071R1_094.ab1   465 
  189    UCW061_B12_BE498768Sn27P033F04P002B071F1_094.ab1   142 
  585  C UCW062_B12_BE498768Sn27P033F04P002B071R1_094.ab1    37 
  593    UCW061_B12_BE498768Sn27P033F04P002B071F1_094.ab1   546 
Contig length: old 661, new 662

Contig length: old 662, new 662
New start: 0