No. words: 1232; after pruning: 1206


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 10.5 (1,1:568)  546  0.00 0.00 0.18  UCW061_G12_BE498768Sn32P033F04P002B071F1_084.ab1        1   565 (43)  C UCW062_G12_BE498768Sn32P033F04P002B071R1_084.ab1   (56)   568     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C UCW062_G12_BE498768Sn32P033F04P002B071R1_084.ab1   624 
  464    UCW061_G12_BE498768Sn32P033F04P002B071F1_084.ab1   408 
  584  C UCW062_G12_BE498768Sn32P033F04P002B071R1_084.ab1    41 
  596    UCW061_G12_BE498768Sn32P033F04P002B071F1_084.ab1   540 
Contig length: old 663, new 664

Contig length: old 664, new 664
New start: 0