No. words: 1236; after pruning: 1210


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 10.7 (1,1:583)  549  0.17 0.00 0.35  UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1        9   584 (36)  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   (41)   575     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   616 
   69    UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1    36 
  113  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   504 
  137    UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1   104 
  153  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   464 
  173    UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1   140 
  193  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   424 
  237    UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1   204 
  421  C UCW062_A10_BE498768Ta11P033F04P002B071R1_080.ab1   196 
  437    UCW061_A10_BE498768Ta11P033F04P002B071F1_080.ab1   404 
Contig length: old 652, new 653

Contig length: old 653, new 653
New start: 0