No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 9.5 (1,1:592)  561  0.00 0.00 0.34  UCW061_E10_BE498768Ta15P033F04P002B071F1_072.ab1        9   593 (27)  C UCW062_E10_BE498768Ta15P033F04P002B071R1_072.ab1   (49)   584     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1  C UCW062_E10_BE498768Ta15P033F04P002B071R1_072.ab1   633 
   77    UCW061_E10_BE498768Ta15P033F04P002B071F1_072.ab1    36 
  125  C UCW062_E10_BE498768Ta15P033F04P002B071R1_072.ab1   509 
  145    UCW061_E10_BE498768Ta15P033F04P002B071F1_072.ab1   104 
  161  C UCW062_E10_BE498768Ta15P033F04P002B071R1_072.ab1   473 
  169    UCW061_E10_BE498768Ta15P033F04P002B071F1_072.ab1   128 
  177  C UCW062_E10_BE498768Ta15P033F04P002B071R1_072.ab1   457 
  217    UCW061_E10_BE498768Ta15P033F04P002B071F1_072.ab1   176 
Contig length: old 660, new 661

Contig length: old 661, new 661
New start: 0