No. words: 1283; after pruning: 1257


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.5 (1,1:582)  566  0.00 0.00 0.00  UCW007F_C02_BE498768Tu01P002B01B071F1_012.ab1        1   582 (60)  C UCW007R_C02_BE498768Tu01P002B01B071R1_012.ab1   (58)   583     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCW007R_C02_BE498768Tu01P002B01B071R1_012.ab1   641 
  118    UCW007F_C02_BE498768Tu01P002B01B071F1_012.ab1    60 
  122  C UCW007R_C02_BE498768Tu01P002B01B071R1_012.ab1   520 
  254    UCW007F_C02_BE498768Tu01P002B01B071F1_012.ab1   196 
  258  C UCW007R_C02_BE498768Tu01P002B01B071R1_012.ab1   384 
  634    UCW007F_C02_BE498768Tu01P002B01B071F1_012.ab1   576 
Contig length: old 700, new 700

Contig length: old 700, new 700
New start: 0