No. words: 3435; after pruning: 3369


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 16.2 (1,1:817)  781  0.62 0.12 0.00  UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1        7   818 (44)  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   (44)   813     1 *
Merge:(0)    3    0.0 15.4 (1,1:816)  792  0.12 0.12 0.12  UCW018F_C12_BE498768Tu02P014A06P014A121F1_092.ab1        4   817 (39)  C UCW018R_C12_BE498768Tu02P014A06P014A121R1_092.ab1   (46)   814     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 3       1        0
 5       1        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  394 nodes

 199 str. conn. components

Path
    1  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   857 
   56    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1    18 
   60  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   798 
   92    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1    53 
   96  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   762 
  100    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1    61 
  116  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   742 
  131    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1    92 
  387  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   471 
  751    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1   712 
  755  C UCW030R_G08_BE498768Tu02P014A06P014A121R1_052.ab1   103 
  839    UCW030F_G08_BE498768Tu02P014A06P014A121F1_052.ab1   800 
Contig length: old 901, new 901

Contig 1:  400 nodes

 202 str. conn. components

Path
    1  C UCW018R_C12_BE498768Tu02P014A06P014A121R1_092.ab1   860 
   54    UCW018F_C12_BE498768Tu02P014A06P014A121F1_092.ab1    11 
  529  C UCW018R_C12_BE498768Tu02P014A06P014A121R1_092.ab1   331 
  545    UCW018F_C12_BE498768Tu02P014A06P014A121F1_092.ab1   502 
  573  C UCW018R_C12_BE498768Tu02P014A06P014A121R1_092.ab1   287 
  750    UCW018F_C12_BE498768Tu02P014A06P014A121F1_092.ab1   707 
  754  C UCW018R_C12_BE498768Tu02P014A06P014A121R1_092.ab1   106 
  853    UCW018F_C12_BE498768Tu02P014A06P014A121F1_092.ab1   811 
Contig length: old 899, new 898

Contig length: old 901, new 901
New start: 0 

Contig length: old 898, new 898
New start: 0