No. words: 1590; after pruning: 1564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.9 (1,1:1547)   37  0.00 0.00 0.00  UCW003F_C02_BE498878At01P002A04A101F1_006.ab1      791   832 (0)  C UCW003R_C02_BE498878At01P002A04A101R1_006.ab1   (0)   758   717 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1    UCW003F_C02_BE498878At01P002A04A101F1_006.ab1     1 
  798  C UCW003R_C02_BE498878At01P002A04A101R1_006.ab1   751 
Contig length: old 1548, new 1548

Contig length: old 1548, new 1548
New start: 0