No. words: 1699; after pruning: 1659


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.1 -1.1 (1,1:1573)   92  4.00 0.80 0.80  UCW003F_A01_BE498878Ld01P002A04A101F1_001.ab1      757   881 (0)  C UCW003R_A01_BE498878Ld01P002A04A101R1_001.ab1   (0)   818   694 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1    UCW003F_A01_BE498878Ld01P002A04A101F1_001.ab1     1 
  794  C UCW003R_A01_BE498878Ld01P002A04A101R1_001.ab1   781 
  798    UCW003F_A01_BE498878Ld01P002A04A101F1_001.ab1   798 
  806  C UCW003R_A01_BE498878Ld01P002A04A101R1_001.ab1   769 
Contig length: old 1574, new 1574

Contig length: old 1574, new 1576
New start: 0 
S Change at: 300; seg lengths: entry 1, contig 1
I Change at: 818; seg lengths: entry 1, contig 0
I Change at: 838; seg lengths: entry 1, contig 0