No. words: 1659; after pruning: 1619


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.7 (1,1:1572)   74  0.00 1.18 0.00  UCW003F_B01_BE498878Ld02P002A04A101F1_009.ab1      765   849 (0)  C UCW003R_B01_BE498878Ld02P002A04A101R1_009.ab1   (0)   810   725 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  42 nodes

 23 str. conn. components

Path
    1    UCW003F_B01_BE498878Ld02P002A04A101F1_009.ab1     1 
  772  C UCW003R_B01_BE498878Ld02P002A04A101R1_009.ab1   803 
  776    UCW003F_B01_BE498878Ld02P002A04A101F1_009.ab1   776 
  808  C UCW003R_B01_BE498878Ld02P002A04A101R1_009.ab1   767 
  812    UCW003F_B01_BE498878Ld02P002A04A101F1_009.ab1   812 
  820  C UCW003R_B01_BE498878Ld02P002A04A101R1_009.ab1   755 
  834    UCW003F_B01_BE498878Ld02P002A04A101F1_009.ab1   833 
  838  C UCW003R_B01_BE498878Ld02P002A04A101R1_009.ab1   737 
Contig length: old 1573, new 1574

Contig length: old 1574, new 1574
New start: 0 
S Change at: 271; seg lengths: entry 1, contig 1