No. words: 1527; after pruning: 1473


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.3 (1,1:1459)   62  1.49 0.00 0.00  UCW003F_C01_BE498878Ld03P002A04A101F1_002.ab1      673   739 (0)  C UCW003R_C01_BE498878Ld03P002A04A101R1_002.ab1   (0)   788   722 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    UCW003F_C01_BE498878Ld03P002A04A101F1_002.ab1     1 
  676  C UCW003R_C01_BE498878Ld03P002A04A101R1_002.ab1   785 
  680    UCW003F_C01_BE498878Ld03P002A04A101F1_002.ab1   680 
  684  C UCW003R_C01_BE498878Ld03P002A04A101R1_002.ab1   777 
  692    UCW003F_C01_BE498878Ld03P002A04A101F1_002.ab1   692 
  712  C UCW003R_C01_BE498878Ld03P002A04A101R1_002.ab1   749 
  716    UCW003F_C01_BE498878Ld03P002A04A101F1_002.ab1   716 
  730  C UCW003R_C01_BE498878Ld03P002A04A101R1_002.ab1   731 
Contig length: old 1460, new 1460

Contig length: old 1460, new 1460
New start: 0 
S Change at: 207; seg lengths: entry 1, contig 1
S Change at: 585; seg lengths: entry 1, contig 1