No. words: 1635; after pruning: 1595


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.3 (1,1:1540)   81  0.00 1.08 0.00  UCW003F_H01_BE498878Tu01P002A04A101F1_012.ab1      730   822 (0)  C UCW003R_H01_BE498878Tu01P002A04A101R1_012.ab1   (0)   813   720 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1    UCW003F_H01_BE498878Tu01P002A04A101F1_012.ab1     1 
  757  C UCW003R_H01_BE498878Tu01P002A04A101R1_012.ab1   786 
  761    UCW003F_H01_BE498878Tu01P002A04A101F1_012.ab1   761 
  769  C UCW003R_H01_BE498878Tu01P002A04A101R1_012.ab1   774 
  773    UCW003F_H01_BE498878Tu01P002A04A101F1_012.ab1   773 
  795  C UCW003R_H01_BE498878Tu01P002A04A101R1_012.ab1   747 
  799    UCW003F_H01_BE498878Tu01P002A04A101F1_012.ab1   799 
  811  C UCW003R_H01_BE498878Tu01P002A04A101R1_012.ab1   731 
Contig length: old 1541, new 1541

Contig length: old 1541, new 1541
New start: 0 
S Change at: 250; seg lengths: entry 1, contig 1