No. words: 1595; after pruning: 1569


Histogram of relative pair offsets, for read pairs with multiple alignments:
70     4
71     2
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:1252)  326  0.00 0.00 0.58  UCW002F_E09_BE499257Ld05P002D06D121F1_067.ab1      479   821 (0)  C UCW002R_E09_BE499257Ld05P002D06D121R1_067.ab1   (0)   774   434 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    UCW002F_E09_BE499257Ld05P002D06D121F1_067.ab1     1 
  628  C UCW002R_E09_BE499257Ld05P002D06D121R1_067.ab1   627 
  632    UCW002F_E09_BE499257Ld05P002D06D121F1_067.ab1   632 
  640  C UCW002R_E09_BE499257Ld05P002D06D121R1_067.ab1   615 
Contig length: old 1253, new 1254

Contig length: old 1254, new 1254
New start: 0