No. words: 1549; after pruning: 1523


Histogram of relative pair offsets, for read pairs with multiple alignments:
70     2
71     2
72     2
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:1259)  280  0.35 0.00 0.00  UCW002F_G09_BE499257Ld07P002D06D121F1_068.ab1      512   800 (0)  C UCW002R_G09_BE499257Ld07P002D06D121R1_068.ab1   (0)   749   461 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  142 nodes

 73 str. conn. components

Path
    1    UCW002F_G09_BE499257Ld07P002D06D121F1_068.ab1     1 
  618  C UCW002R_G09_BE499257Ld07P002D06D121R1_068.ab1   643 
  622    UCW002F_G09_BE499257Ld07P002D06D121F1_068.ab1   622 
  642  C UCW002R_G09_BE499257Ld07P002D06D121R1_068.ab1   619 
Contig length: old 1260, new 1260

Contig length: old 1260, new 1260
New start: 0