No. words: 1512; after pruning: 1486


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:1239)  266  0.00 0.00 0.00  UCW005F_A04_BE499599As01P002H02H081F1_021.ab1      434   705 (0)  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   (0)   807   536 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1    UCW005F_A04_BE499599As01P002H02H081F1_021.ab1     1 
  545  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   696 
  553    UCW005F_A04_BE499599As01P002H02H081F1_021.ab1   553 
  561  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   680 
  573    UCW005F_A04_BE499599As01P002H02H081F1_021.ab1   573 
  577  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   664 
  605    UCW005F_A04_BE499599As01P002H02H081F1_021.ab1   605 
  609  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   632 
  621    UCW005F_A04_BE499599As01P002H02H081F1_021.ab1   621 
  625  C UCW005R_A04_BE499599As01P002H02H081R1_021.ab1   616 
Contig length: old 1240, new 1240

Contig length: old 1240, new 1240
New start: 0