No. words: 1591; after pruning: 1565


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:1249)  335  0.29 0.00 0.00  UCW005F_B04_BE499599At02P002H02H081F1_029.ab1      400   740 (0)  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   (0)   851   511 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    UCW005F_B04_BE499599At02P002H02H081F1_029.ab1     1 
  554  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   697 
  558    UCW005F_B04_BE499599At02P002H02H081F1_029.ab1   558 
  598  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   653 
  610    UCW005F_B04_BE499599At02P002H02H081F1_029.ab1   610 
  614  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   637 
  622    UCW005F_B04_BE499599At02P002H02H081F1_029.ab1   622 
  630  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   621 
  662    UCW005F_B04_BE499599At02P002H02H081F1_029.ab1   662 
  666  C UCW005R_B04_BE499599At02P002H02H081R1_029.ab1   585 
Contig length: old 1250, new 1250

Contig length: old 1250, new 1250
New start: 0