No. words: 1609; after pruning: 1583


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:1269)  325  0.59 0.00 0.29  UCW005F_A03_BE499599Ld01P002H02H081F1_017.ab1      437   776 (0)  C UCW005R_A03_BE499599Ld01P002H02H081R1_017.ab1   (0)   833   495 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    UCW005F_A03_BE499599Ld01P002H02H081F1_017.ab1     1 
  643  C UCW005R_A03_BE499599Ld01P002H02H081R1_017.ab1   628 
Contig length: old 1270, new 1270

Contig length: old 1270, new 1270
New start: 0