No. words: 1515; after pruning: 1489


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:1238)  270  0.36 0.00 0.00  UCW005F_F03_BE499599Ld06P002H02H081F1_027.ab1      457   732 (0)  C UCW005R_F03_BE499599Ld06P002H02H081R1_027.ab1   (0)   783   508 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    UCW005F_F03_BE499599Ld06P002H02H081F1_027.ab1     1 
  504  C UCW005R_F03_BE499599Ld06P002H02H081R1_027.ab1   736 
  515    UCW005F_F03_BE499599Ld06P002H02H081F1_027.ab1   515 
  575  C UCW005R_F03_BE499599Ld06P002H02H081R1_027.ab1   665 
  583    UCW005F_F03_BE499599Ld06P002H02H081F1_027.ab1   583 
  591  C UCW005R_F03_BE499599Ld06P002H02H081R1_027.ab1   649 
  595    UCW005F_F03_BE499599Ld06P002H02H081F1_027.ab1   595 
  599  C UCW005R_F03_BE499599Ld06P002H02H081R1_027.ab1   641 
Contig length: old 1239, new 1239

Contig length: old 1239, new 1239
New start: 0