No. words: 1508; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.8 (1,1:1244)  260  0.00 0.00 0.00  UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1      454   716 (0)  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   (0)   792   530 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1    UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1     1 
  569  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   677 
  573    UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1   573 
  581  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   665 
  585    UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1   585 
  597  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   649 
  601    UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1   601 
  617  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   629 
  637    UCW005F_G03_BE499599Ld07P002H02H081F1_020.ab1   637 
  641  C UCW005R_G03_BE499599Ld07P002H02H081R1_020.ab1   605 
Contig length: old 1245, new 1245

Contig length: old 1245, new 1245
New start: 0