No. words: 1506; after pruning: 1480


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1033)  457  0.64 0.00 0.00  UCW049_C06_BE499599Sn28P002H08P022C121F1_044.ab1      236   707 (0)  C UCW050_C06_BE499599Sn28P002H08P022C121R1_044.ab1   (0)   799   328 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1    UCW049_C06_BE499599Sn28P002H08P022C121F1_044.ab1     1 
  480  C UCW050_C06_BE499599Sn28P002H08P022C121R1_044.ab1   555 
  488    UCW049_C06_BE499599Sn28P002H08P022C121F1_044.ab1   488 
  492  C UCW050_C06_BE499599Sn28P002H08P022C121R1_044.ab1   543 
  500    UCW049_C06_BE499599Sn28P002H08P022C121F1_044.ab1   500 
  504  C UCW050_C06_BE499599Sn28P002H08P022C121R1_044.ab1   531 
  540    UCW049_C06_BE499599Sn28P002H08P022C121F1_044.ab1   540 
  544  C UCW050_C06_BE499599Sn28P002H08P022C121R1_044.ab1   491 
Contig length: old 1034, new 1034

Contig length: old 1034, new 1034
New start: 0