No. words: 1222; after pruning: 1196


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:997)  199  1.79 0.00 0.89  UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1      427   650 (0)  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   (0)   572   351 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1    UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1     1 
  494  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   505 
  498    UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1   498 
  532  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   467 
  552    UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1   552 
  556  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   443 
  591    UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1   592 
  599  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   400 
  615    UCW049_B04_BE499599Ta12P002H08P022C121F1_030.ab1   616 
  619  C UCW050_B04_BE499599Ta12P002H08P022C121R1_030.ab1   380 
Contig length: old 998, new 998

Contig length: old 998, new 998
New start: 0