No. words: 1062; after pruning: 1036


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.1 (1,1:1000)   55  1.64 0.00 0.00  UCW047_E08_BE499599Ta13P002H08P022A121F1_056.ab1      303   363 (0)  C UCW048_E08_BE499599Ta13P002H08P022A121R1_056.ab1   (0)   699   639 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  22 nodes

 13 str. conn. components

Path
    1    UCW047_E08_BE499599Ta13P002H08P022A121F1_056.ab1     1 
  344  C UCW048_E08_BE499599Ta13P002H08P022A121R1_056.ab1   658 
Contig length: old 1001, new 1001

Contig length: old 1001, new 1001
New start: 0