No. words: 1619; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.2 (1,1:1037)  570  0.00 0.17 0.00  UCW049_D04_BE499599Ta14P002H08P022C121F1_026.ab1      174   753 (0)  C UCW050_D04_BE499599Ta14P002H08P022C121R1_026.ab1   (0)   866   286 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  288 nodes

 146 str. conn. components

Path
    1    UCW049_D04_BE499599Ta14P002H08P022C121F1_026.ab1     1 
  397  C UCW050_D04_BE499599Ta14P002H08P022C121R1_026.ab1   643 
  421    UCW049_D04_BE499599Ta14P002H08P022C121F1_026.ab1   421 
  469  C UCW050_D04_BE499599Ta14P002H08P022C121R1_026.ab1   571 
  473    UCW049_D04_BE499599Ta14P002H08P022C121F1_026.ab1   473 
  501  C UCW050_D04_BE499599Ta14P002H08P022C121R1_026.ab1   539 
Contig length: old 1038, new 1039

Contig length: old 1039, new 1039
New start: 0