No. words: 1596; after pruning: 1570


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:1038)  532  0.90 0.00 0.18  UCW049_E04_BE499599Ta15P002H08P022C121F1_024.ab1      200   756 (0)  C UCW050_E04_BE499599Ta15P002H08P022C121R1_024.ab1   (0)   840   285 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    UCW049_E04_BE499599Ta15P002H08P022C121F1_024.ab1     1 
  472  C UCW050_E04_BE499599Ta15P002H08P022C121R1_024.ab1   568 
  496    UCW049_E04_BE499599Ta15P002H08P022C121F1_024.ab1   496 
  528  C UCW050_E04_BE499599Ta15P002H08P022C121R1_024.ab1   512 
Contig length: old 1039, new 1039

Contig length: old 1039, new 1039
New start: 0