No. words: 1458; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:1044)  407  0.24 0.00 0.00  UCW049_G04_BE499599Ta17P002H08P022C121F1_020.ab1      375   787 (0)  C UCW050_G04_BE499599Ta17P002H08P022C121R1_020.ab1   (0)   671   259 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1    UCW049_G04_BE499599Ta17P002H08P022C121F1_020.ab1     1 
  575  C UCW050_G04_BE499599Ta17P002H08P022C121R1_020.ab1   471 
  591    UCW049_G04_BE499599Ta17P002H08P022C121F1_020.ab1   591 
  595  C UCW050_G04_BE499599Ta17P002H08P022C121R1_020.ab1   451 
  599    UCW049_G04_BE499599Ta17P002H08P022C121F1_020.ab1   599 
  603  C UCW050_G04_BE499599Ta17P002H08P022C121R1_020.ab1   443 
  627    UCW049_G04_BE499599Ta17P002H08P022C121F1_020.ab1   627 
  631  C UCW050_G04_BE499599Ta17P002H08P022C121R1_020.ab1   415 
Contig length: old 1045, new 1045

Contig length: old 1045, new 1045
New start: 0