No. words: 1555; after pruning: 1529


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:1049)  499  0.00 0.00 0.00  UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1      200   704 (0)  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   (0)   851   347 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1     1 
  483  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   568 
  503    UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1   503 
  507  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   544 
  515    UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1   515 
  519  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   532 
  547    UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1   547 
  551  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   500 
  555    UCW049_B05_BE499599Ta20P002H08P022C121F1_045.ab1   555 
  559  C UCW050_B05_BE499599Ta20P002H08P022C121R1_045.ab1   492 
Contig length: old 1050, new 1050

Contig length: old 1050, new 1050
New start: 0