No. words: 1268; after pruning: 1242


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.5 (1,1:993)  256  1.46 0.00 0.00  UCW047_F09_BE499599Ta22P002H08P022A121F1_069.ab1      290   563 (0)  C UCW048_F09_BE499599Ta22P002H08P022A121R1_069.ab1   (0)   705   432 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1    UCW047_F09_BE499599Ta22P002H08P022A121F1_069.ab1     1 
  392  C UCW048_F09_BE499599Ta22P002H08P022A121R1_069.ab1   603 
  408    UCW047_F09_BE499599Ta22P002H08P022A121F1_069.ab1   408 
  412  C UCW048_F09_BE499599Ta22P002H08P022A121R1_069.ab1   583 
  420    UCW047_F09_BE499599Ta22P002H08P022A121F1_069.ab1   420 
  428  C UCW048_F09_BE499599Ta22P002H08P022A121R1_069.ab1   567 
Contig length: old 994, new 994

Contig length: old 994, new 994
New start: 0