No. words: 1103; after pruning: 1077


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.3 (1,1:992)   98  2.73 0.00 0.00  UCW047_A07_BE499599Td01P002H08P022A121F1_063.ab1      430   539 (0)  C UCW048_A07_BE499599Td01P002H08P022A121R1_063.ab1   (0)   564   455 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    UCW047_A07_BE499599Td01P002H08P022A121F1_063.ab1     1 
  507  C UCW048_A07_BE499599Td01P002H08P022A121R1_063.ab1   487 
  523    UCW047_A07_BE499599Td01P002H08P022A121F1_063.ab1   523 
  527  C UCW048_A07_BE499599Td01P002H08P022A121R1_063.ab1   467 
  531    UCW047_A07_BE499599Td01P002H08P022A121F1_063.ab1   531 
  535  C UCW048_A07_BE499599Td01P002H08P022A121R1_063.ab1   459 
Contig length: old 993, new 993

Contig length: old 993, new 993
New start: 0