No. words: 1691; after pruning: 1665


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:1261)  415  0.47 0.23 0.00  UCW005F_D04_BE499599Tu02P002H02H081F1_030.ab1      384   811 (0)  C UCW005R_D04_BE499599Tu02P002H02H081R1_030.ab1   (0)   880   452 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1    UCW005F_D04_BE499599Tu02P002H02H081F1_030.ab1     1 
  654  C UCW005R_D04_BE499599Tu02P002H02H081R1_030.ab1   609 
Contig length: old 1262, new 1262

Contig length: old 1262, new 1262
New start: 0