No. words: 1534; after pruning: 1508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:1073)  450  0.22 0.00 0.00  UCW001F_C08_BE591275At01P002G04G101F1_054.ab1      293   752 (0)  C UCW001R_C08_BE591275At01P002G04G101R1_054.ab1   (0)   782   323 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  230 nodes

 117 str. conn. components

Path
    1    UCW001F_C08_BE591275At01P002G04G101F1_054.ab1     1 
  497  C UCW001R_C08_BE591275At01P002G04G101R1_054.ab1   578 
  505    UCW001F_C08_BE591275At01P002G04G101F1_054.ab1   505 
  513  C UCW001R_C08_BE591275At01P002G04G101R1_054.ab1   562 
  549    UCW001F_C08_BE591275At01P002G04G101F1_054.ab1   549 
  553  C UCW001R_C08_BE591275At01P002G04G101R1_054.ab1   522 
  557    UCW001F_C08_BE591275At01P002G04G101F1_054.ab1   557 
  569  C UCW001R_C08_BE591275At01P002G04G101R1_054.ab1   506 
Contig length: old 1074, new 1074

Contig length: old 1074, new 1074
New start: 0