No. words: 1643; after pruning: 1603


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:1093)  532  0.73 0.00 0.00  UCW001F_D08_BE591275At02P002G04G101F1_062.ab1      218   766 (0)  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   (0)   877   329 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCW001F_D08_BE591275At02P002G04G101F1_062.ab1     1 
  499  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   596 
  507    UCW001F_D08_BE591275At02P002G04G101F1_062.ab1   507 
  519  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   576 
  523    UCW001F_D08_BE591275At02P002G04G101F1_062.ab1   523 
  531  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   564 
  571    UCW001F_D08_BE591275At02P002G04G101F1_062.ab1   571 
  579  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   516 
  583    UCW001F_D08_BE591275At02P002G04G101F1_062.ab1   583 
  587  C UCW001R_D08_BE591275At02P002G04G101R1_062.ab1   508 
Contig length: old 1094, new 1094

Contig length: old 1094, new 1094
New start: 0